from http://cdwscience.blogspot.com/
UNIX:
Perl:
- Downloading Perl
- For Windows: Install using ActivePerl
- Perl usually comes pre-installed on Macs
- Perl IDEs
- EPIC
- Open Perl IDE
- Notepad++
- useful for various programming needs
- References
- perldoc
- definitions for common perl functions
- also contains some tutorials
- BioPerl
- contains modules for common bioinformatic analysis
- Beginning Perl for Bioinformatics
- good book to start learning Perl (it's what I used!)
- Exercises available for free download
- Mastering Perl for Bioinformatics
Python:
- General Python Tutorial
- Google's Python Class
- Biopython
- contains modules for common bioinformatic analysis
R:
- Installing R
- Download Source Code or Binaries
- Download Windows R GUI
- Install Bioconductor Packages
- Rtools - necessary for building R packages on a Windows computer
- If Rtools doesn't initially work try:
- Making sure that your version of R and Rtools are compatible
- Add
PATH: C:\Program Files\R\R-2.15.1\bin\x64;C:\Rtools\bin;C:\Rtools\gcc-4.6.3\bin - References
Other:
- Vi Text Editor
- Basic MS-DOS tutorial
- LaTeX tutorial
- MiKTeX - Windows software for processing Tex/LaLeX files; also useful for compiling R packages
- MacTeX - Mac software for processing Tex/LaLeX files
- Google Code University
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