Microscopy Image Analysis / Visualization:
- ImageJ - NIH image viewer and analysis tool
- Fiji - Fiji Is Just ImageJ
- ImageJ wrapper containing a number of plug-ins for advanced analysis
- Cell Profiler
- free advanced image analysis tool from the Broad Institute
- Cell Profiler Analyst
- tool for high-throughput image analysis
- LSM Image Viewer
- free software to view .lsm images
- more advanced software is commercially available
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